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It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology This is a list of some of the models and features in beast: Beast | bayesian evolutionary analysis sampling trees
This is the main program that takes a control file generated by beauti and performs the analysis. Details about the individual programs that make up the beast package can be found here Running beast for the first time this tutorial will guide you through running beast and some of its accessory programs to do a simple phylogenetic analysis
If you haven’t already, download and install beast following these instructions.
Figtree is a program for viewing trees, including summary information produced by treeannotator, and producing publication quality figures. The current version of beagle will only work with beast v1.6 or later downloading and installing beagle. Installing beast beast has been developed in java, which allows the same code to run on any platform that has the java software installed
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